CSSL Finder features

CSSL Finder aims to help at developing, managing and analyzing advanced introgression lines, like Chromosome Segment Substitution Lines, or CSSLs.

The main features of this program are:

- find the best set of lines that maximizes the donor genome coverage, with the smallest undesirable genetic background,

- display graphical genotypes of this set,

- display graphical phenotypic values of these lines.

- look for QTLs through ANOVA 1 analysis (including permutation tests for empirical threshold determination),

- obtain statistics on lines and markers,

Several other features are available, that you will discover while playing with the different options.